Suppress or remove owltools *-summary.txt files from pipeline reports

[kltm]

Given the ongoing confusion around owltools *-summary.txt reports, we want to suppress or remove these files from pipeline reports.

The -summary.txt files are the last remainder of the owltools reports, currently suppressed form getting to the html file, but not fully removed. (https://github.com/geneontology/pipeline/issues/184, from https://github.com/geneontology/go-site/issues/1095). If there is truly no longer any use for these -summary.txt files, we can either try and prevent their creation or filter them out and prevent them from getting into the final product.

(Also https://github.com/geneontology/go-site/issues/1816)

[kltm]

@pgaudet Noting that the following GORULEs reference the summary (and other owltool) files: [db_species]-summary.txt. We'll need to update that before going live with a release or snapshot.

• [ ] GORULE:0000001
• [ ] GORULE:0000003
• [ ] GORULE:0000006
• [ ] GORULE:0000007

[kltm]

@pgaudet Would you like this in for the next release attempt? Example output here: http://skyhook.berkeleybop.org/master/reports/

[pgaudet]

This looks OK for example for E. coli, however on skyhook some species are missing like CGD; is that expected?

Thanks, Pascale

[kltm]

@pgaudet For those sample runs, many (most) species/resources are missing so we can run it faster. The important thing there is to note what files are produced for the represented resources.

[kltm]

Talking to @pgaudet , we'll go ahead with the release with this new setup and will circle back around to cleaning any documentation later on (i.e. https://github.com/geneontology/pipeline/issues/281#issuecomment-1104444179 and https://github.com/geneontology/go-site/issues/1842).

[kltm]

No longer available. Closing.