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geneontology / pipeline

Declarative pipeline for the Gene Ontology.
https://build.geneontology.org/job/geneontology/job/pipeline/
BSD 3-Clause "New" or "Revised" License
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Suppression of ND Annotations When Other Annotations come in from ISO and IEA loads #343

Closed ukemi closed 2 months ago

ukemi commented 8 months ago

This came up for a separate ticket at MGI, but I realize that we have to deal with it here.

  1. When curators have reviewed the literature and can't find any information about a gene, then make a special annotation to the root node. This annotation is a placeholder that curators use to determine that a gene has been reviewed.
  2. If annotations exist from one of the ISO pipelines or an IEA pipeline, then the annotation is retained in MGI but the display is suppressed on the front end (public).
  3. If an annotation comes in from the GOA mouse load, then the annotation is removed from the database. @leemdi, is this correct?

We need to figure out how to deal with this on the GOC end now.

sierra-moxon commented 4 months ago

@leemdi - do you remember if this is something you're handling at your end, or if there needs to be additional support on the GO side of the fence for this one?

kltm commented 4 months ago

Tagging on @LiNiMGI to follow up.

pgaudet commented 3 months ago

This should be covered by gorule-0000048

https://github.com/geneontology/go-site/issues/914

We could consider implementing this as a filter after the pipeline is finished.

pgaudet commented 2 months ago

@LiNiMGI will check if MGI can do something on their end, until GOC can implement the check.