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geneontology / pipeline

Declarative pipeline for the Gene Ontology.
https://build.geneontology.org/job/geneontology/job/pipeline/
BSD 3-Clause "New" or "Revised" License
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Test SGD manual annotations exported from Noctua models #354

Closed dustine32 closed 3 months ago

dustine32 commented 5 months ago

Similar to #237, add a testing pipeline for SGD manually curated data in the pipeline system for testing.

Tagging @suzialeksander @kltm

kltm commented 5 months ago

@dustine32 If this is a "work item", can this be binned into a project?

kltm commented 5 months ago

(Binned; change if wrong.)

suzialeksander commented 5 months ago

@dustine32 after today's call can you clarify this ticket is still needed, and if it is what you will need to test? Other than the upstream-of-GO changes, nothing at GO should change. I'll spot check the import during this week's outage, if that's what you meant please reassign this ticket to me

dustine32 commented 5 months ago

@suzialeksander Yep, you are correct. We shouldn't need this pipeline branch or https://github.com/geneontology/go-site/tree/issue-pipeline-354-sgd-test-pipeline since there won't be any changes to GO metadata.

But one of the nice perks of this test branch is that we get a public URL for the test Noctua GPAD output: http://skyhook.berkeleybop.org/issue-354-sgd-test-pipeline/products/upstream_and_raw_data/noctua_sgd.gpad.gz

suzialeksander commented 3 months ago

I don't think there's any work here. SGD annotations will have a final check in the next import but are now "in" Noctua.