Switch PANTHER trees to version 19.0

geneontology / pipeline

Declarative pipeline for the Gene Ontology.

https://build.geneontology.org/job/geneontology/job/pipeline/

BSD 3-Clause "New" or "Revised" License

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Switch PANTHER trees to version 19.0 #399

Open dustine32 opened 3 weeks ago

dustine32 commented 3 weeks ago

The official ticket for switching pipeline components to PANTHER 19.0 (from 17.0). Tested in https://github.com/geneontology/go-site/issues/2364.

[x] Update PANTHER_VERSION in Jenkinsfile. https://github.com/geneontology/pipeline/pull/400
[x] Update metadata/go-reference-species.yaml in go-site to reflect new 19.0 species. https://github.com/geneontology/go-site/pull/2372
[x] Swap symlink on data.pantherdb.org to point to latest 19.0 IBA GAFs

dustine32 commented 3 weeks ago

Speaking with @kltm yesterday, I will PR the PANTHER_VERSION change into Jenkinsfile on all 6 of these relevant branches:

[x] master - PR: https://github.com/geneontology/pipeline/pull/400
[x] snapshot - PR: #401
[x] snapshot-post-fail - PR: #402
[x] release - PR: #403
[x] derivatives-from-goa - PR: #404
[x] go-raw-data - PR: #405

After merging these PRs into their branches I will scan repository on build to flush the changes so they don't run automatically.

dustine32 commented 3 weeks ago

Merged all six Jenkinsfile PRs and scanned repository and aborted all launched runs. I then deleted the PR branches so they no longer would show on the Jenkins build UI.

With the go-site/metadata/go-reference-species.yaml PR merged and pantherftp symlink switched, everything should be in place for the next snapshot run.

kltm commented 3 weeks ago

@dustine32 @pgaudet Noting that we should now have PANTHER 19 propagated through snapshot.