GORULES (low-hanging fruit)

[kltm]

Project link

https://github.com/orgs/geneontology/projects/165

Project description

The purpose of this project is to complete easy and high-value gorules tickets, adding to the current work in ontobio. This excludes migrating to new base software, refactors, or spinning GO portions out of ontobio.

Note that the tickets in this project were taken from open tickets in https://github.com/orgs/geneontology/projects/47 https://github.com/orgs/geneontology/projects/40 - this needs to be vetted.

PI

Chris

Project owner (PO)

Pascale

Technical lead (TL)

Dustin

Other personnel (OP)

Anushya, Seth

Technical specs

N/A

Other comments

The assumption here is that all rules, tests, etc. will be using the current state of the ontobio system. If that needs to change, @kltm would like a tech doc and review.

[kltm]

@pgaudet If you have gone through the rules that you want to add and have covered that with myself and/or @dustine32, I think this is ready to move to active with you and @mugitty

[pgaudet]

Sounds good, please go ahead

[kltm]

@pgaudet I've moved this over to active; please go ahead and add the review dates for this in the active projects board https://github.com/orgs/geneontology/projects/108/views/3

[pgaudet]

Status of GO rules: https://docs.google.com/spreadsheets/d/1rCc2UL1IDDpyqc3Lp-Wuu9onzbWCeySEBfq59o4_0KI/edit#gid=0

[pgaudet]

Call Anushya & Pascale 2023-08-31

• [x] fixed gorule-0000003 to set status to deprecated
• [ ] gorule-0000005: we dont know why the error is not showing up in the reports (probably due to being ran be owl-tools)
• [ ] gorule-0000061: more tests

[pgaudet]

Status: Anushya started a pipeline build yesterday. We could have results of the last rules this week.