GPAD/GPI 2.0 Specifications

[pgaudet]

Project link

https://github.com/orgs/geneontology/projects/35

Project description

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PI

Chris

Project owner (PO)

@suzialeksander

Technical lead (TL)

@kltm

Other personnel (OP)

TBD

Technical specs

TBD

Other comments

• Grant Aim #: 2 Annotation and 4 Software Infrastructure
• Priority: High

[kltm]

Initial feedback from @balhoff

I think there are still a few grammar issues—this is still applicable: https://github.com/geneontology/go-annotation/issues/3648

We have these property names with hyphens, but that’s disallowed by the grammar.

We could consider pointing to https://www.w3.org/TR/curie/ instead of defining our own ID.

Not sure if Property_Symbol should include ID; I think all the examples are hyphenated terms.

‘Value' in GPAD header line is not defined.

[pgaudet]

Once this is out, we'll make a new project for GOC to start importing and exporting GPAD/GPI2.0

[kltm]

@pgaudet I'm not sure if a "new" project is necessarily the best way forward on this. It's worth considering that emitting the final GPAD 2.0 spec will be a necessary condition for the completion of the MGI project #77 . Other things may come into line with the spec at different speeds.

[pgaudet]

@kltm

Some bugs in the pipeline that prevented production of GPAD2.0

Potentially fixed, to be confirmed.

[kltm]

@pgaudet This project seems to be about "specs" and is functionally done, as the only remaining bits are docs?

[pgaudet]

Right now the documentation is not linked from the GO website I thought you wanted the GO pipeline to produce the GPAD2.0 files before doing that.

This is the last task needed.

[kltm]

Ah, natch--right you are!

[kltm]

@pgaudet As discussed, remaining (coordination) items moved out and closing.