Update Noctua input / output -> primary input / output

[vanaukenk]

Project link

https://github.com/orgs/geneontology/projects/151

Project description

This project organizes the work needed to update Noctua to use primary input and output instead of input and output. Work is needed in: ShEx, annotations, UI, and possibly import code.

PI

TBD

Product owner (PO)

Kimberly Van Auken

Technical lead (TL)

Seth Carbon

Other personnel (OP)

Jim Balhoff, Dustin Ebert, Pascale Gaudet, Tremayne Mushayahama

Technical specs

TBD (template: https://docs.google.com/document/d/111UqtS3G0aJZpAijZYI3Da0t94OQpGePlPJsqZE4Tio/edit)

Other comments

To do (more specific actions will be recorded in tickets in appropriate repos):

• [ ] Add primary input/output relations to ShEx where needed - cross-check with ontology logical defs
• [ ] Remove transports_or_maintains_localization_of from ShEx
• [ ] Assess impacts on Reactome and yeast pathway imports - needs discussion
• [ ] Create TSV for updating existing relations in Noctua annotations/models
• [ ] Update Noctua UI: form data entry, form table, VPE
• [ ] Trial run of changes on noctua-dev
• [ ] Announcement of changes on annotation call
• [ ] Make changes during Noctua maintenance outage

[pgaudet]

This is OK with me.

When do you plan to start this work? It would be useful to discuss this on a managers call to have everyone on the same page.