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(DEPRECATED) Short form matrix view of all GO annotations for a given gene
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remove duplicates / fix filtering #33

Closed nathandunn closed 6 years ago

nathandunn commented 6 years ago

We have a ton of duplicate issues and problems with filtering.

http://xenademo.berkeleybop.io/ribbon/?subject=HGNC:12373

screen shot 2018-04-17 at 9 05 42 am
nathandunn commented 6 years ago

Also, within this, we can see that the "activity" entries are not included as part of molecular function, though they, should be. However, they are in there as part of "response to stimulus".

nathandunn commented 6 years ago

The data is coming back correctly with 10 annotations. Seems that they are not filtered, but duplicated:

https://api.monarchinitiative.org/api/bioentityset/slimmer/function?&slim=GO:0003824&slim=GO:0004872&slim=GO:0005102&slim=GO:0005215&slim=GO:0005198&slim=GO:0008092&slim=GO:0003677&slim=GO:0003723&slim=GO:0001071&slim=GO:0036094&slim=GO:0046872&slim=GO:0030246&slim=GO:0003674&slim=GO:0008283&slim=GO:0071840&slim=GO:0051179&slim=GO:0032502&slim=GO:0000003&slim=GO:0002376&slim=GO:0050877&slim=GO:0050896&slim=GO:0023052&slim=GO:0010467&slim=GO:0019538&slim=GO:0006259&slim=GO:0044281&slim=GO:0050789&slim=GO:0042592&slim=GO:0007610&slim=GO:0008150&slim=GO:0005576&slim=GO:0005737&slim=GO:0005856&slim=GO:0005739&slim=GO:0005634&slim=GO:0005694&slim=GO:0016020&slim=GO:0031982&slim=GO:0071944&slim=GO:0030054&slim=GO:0042995&slim=GO:0032991&slim=GO:0045202&slim=GO:0005575&subject=HGNC:12373

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nathandunn commented 6 years ago

Remove in order of precedence: MF -> BP -> CC