2016-12-02 14:36:46 Autocomplete service call failed Error: The server returned only an empty message.
2016-12-02 14:39:08 CommitTerms service call failed Error: jsonrpc error[-32000] : Caused by java.lang.NullPointerException at org.obolibrary.oboformat.writer.OBOFormatWriter.write(OBOFormatWriter.java:634) at org.obolibrary.oboformat.writer.OBOFormatWriter.write(OBOFormatWriter.java:363) at org.bbop.termgenie.ontology.obo.OboWriterTools.writeFrame(OboWriterTools.java:52) at org.bbop.termgenie.ontology.CommitHistoryTools.create(CommitHistoryTools.java:56) at org.bbop.termgenie.ontology.CommitHistoryTools.translateTerms(CommitHistoryTools.java:137) at org.bbop.termgenie.ontology.CommitHistoryTools.create(CommitHistoryTools.java:122) at org.bbop.termgenie.ontology.OntologyCommitReviewPipeline.commit(OntologyCommitReviewPipeline.java:87) at org.bbop.termgenie.services.DefaultTermCommitServiceImpl$CommitTask.runSimple(DefaultTermCommitServiceImpl.java:426) at org.bbop.termgenie.ontology.OntologyIdManager$OntologyIdManagerTask.run(OntologyIdManager.java:62) at org.bbop.termgenie.ontology.OntologyIdManager$OntologyIdManagerTask.run(OntologyIdManager.java:58) at org.bbop.termgenie.core.management.GenericTaskManager.runManagedTask(GenericTaskManager.java:295) at org.bbop.termgenie.services.DefaultTermCommitServiceImpl.commitTerms(DefaultTermCommitServiceImpl.java:188) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.json.rpc.server.InjectingJsonRpcExecutor.executeMethod(InjectingJsonRpcExecutor.java:264) at org.json.rpc.server.InjectingJsonRpcExecutor.execute(InjectingJsonRpcExecutor.java:171) at org.bbop.termgenie.servlets.TermGenieJsonRPCServlet.doPost(TermGenieJsonRPCServlet.java:43) at javax.servlet.http.HttpServlet.service(HttpServlet.java:648) at javax.servlet.http.HttpServlet.service(HttpServlet.java:729) at com.google.inject.servlet.ServletDefinition.doServiceImpl(ServletDefinition.java:287) at com.google.inject.servlet.ServletDefinition.doService(ServletDefinition.java:277) at com.google.inject.servlet.ServletDefinition.service(ServletDefinition.java:182) at com.google.inject.servlet.ManagedServletPipeline.service(ManagedServletPipeline.java:91) at com.google.inject.servlet.FilterChainInvocation.doFilter(FilterChainInvocation.java:85) at com.google.inject.servlet.ManagedFilterPipeline.dispatch(ManagedFilterPipeline.java:119) at com.google.inject.servlet.GuiceFilter$1.call(GuiceFilter.java:133) at com.google.inject.servlet.GuiceFilter$1.call(GuiceFilter.java:130) at com.google.inject.servlet.GuiceFilter$Context.call(GuiceFilter.java:203) at com.google.inject.servlet.GuiceFilter.doFilter(GuiceFilter.java:130) at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652) at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:585) at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143) at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:577) at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:223) at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1127) at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:515) at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185) at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1061) at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141) at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:215) at org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:110) at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97) at org.eclipse.jetty.server.Server.handle(Server.java:499) at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:311) at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257) at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:544) at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635) at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555) at java.lang.Thread.run(Thread.java:745)
nathandunn
commented
7 years ago
I'm getting the following error on submit:
2016-12-02 14:36:46 Autocomplete service call failed Error: The server returned only an empty message. 2016-12-02 14:39:08 CommitTerms service call failed Error: jsonrpc error[-32000] : Caused by java.lang.NullPointerException at org.obolibrary.oboformat.writer.OBOFormatWriter.write(OBOFormatWriter.java:634) at org.obolibrary.oboformat.writer.OBOFormatWriter.write(OBOFormatWriter.java:363) at org.bbop.termgenie.ontology.obo.OboWriterTools.writeFrame(OboWriterTools.java:52) at org.bbop.termgenie.ontology.CommitHistoryTools.create(CommitHistoryTools.java:56) at org.bbop.termgenie.ontology.CommitHistoryTools.translateTerms(CommitHistoryTools.java:137) at org.bbop.termgenie.ontology.CommitHistoryTools.create(CommitHistoryTools.java:122) at org.bbop.termgenie.ontology.OntologyCommitReviewPipeline.commit(OntologyCommitReviewPipeline.java:87) at org.bbop.termgenie.services.DefaultTermCommitServiceImpl$CommitTask.runSimple(DefaultTermCommitServiceImpl.java:426) at org.bbop.termgenie.ontology.OntologyIdManager$OntologyIdManagerTask.run(OntologyIdManager.java:62) at org.bbop.termgenie.ontology.OntologyIdManager$OntologyIdManagerTask.run(OntologyIdManager.java:58) at org.bbop.termgenie.core.management.GenericTaskManager.runManagedTask(GenericTaskManager.java:295) at org.bbop.termgenie.services.DefaultTermCommitServiceImpl.commitTerms(DefaultTermCommitServiceImpl.java:188) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.json.rpc.server.InjectingJsonRpcExecutor.executeMethod(InjectingJsonRpcExecutor.java:264) at org.json.rpc.server.InjectingJsonRpcExecutor.execute(InjectingJsonRpcExecutor.java:171) at org.bbop.termgenie.servlets.TermGenieJsonRPCServlet.doPost(TermGenieJsonRPCServlet.java:43) at javax.servlet.http.HttpServlet.service(HttpServlet.java:648) at javax.servlet.http.HttpServlet.service(HttpServlet.java:729) at com.google.inject.servlet.ServletDefinition.doServiceImpl(ServletDefinition.java:287) at com.google.inject.servlet.ServletDefinition.doService(ServletDefinition.java:277) at com.google.inject.servlet.ServletDefinition.service(ServletDefinition.java:182) at com.google.inject.servlet.ManagedServletPipeline.service(ManagedServletPipeline.java:91) at com.google.inject.servlet.FilterChainInvocation.doFilter(FilterChainInvocation.java:85) at com.google.inject.servlet.ManagedFilterPipeline.dispatch(ManagedFilterPipeline.java:119) at com.google.inject.servlet.GuiceFilter$1.call(GuiceFilter.java:133) at com.google.inject.servlet.GuiceFilter$1.call(GuiceFilter.java:130) at com.google.inject.servlet.GuiceFilter$Context.call(GuiceFilter.java:203) at com.google.inject.servlet.GuiceFilter.doFilter(GuiceFilter.java:130) at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652) at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:585) at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143) at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:577) at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:223) at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1127) at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:515) at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185) at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1061) at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141) at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:215) at org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:110) at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97) at org.eclipse.jetty.server.Server.handle(Server.java:499) at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:311) at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257) at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:544) at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635) at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555) at java.lang.Thread.run(Thread.java:745)