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geneontology / termgenie

Web-application for pattern-based ontology class generation
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Allow intact IDs as xrefs in TG freeform #36

Open hdietze opened 9 years ago

hdietze commented 9 years ago

Original issue 36 created by hdietze on 2013-12-16T13:08:26.000Z:

Intact IDs are apparently not accepted in the xref box on TermGenie freeform - despite being in GO_xref.abbs. Please could these be added? Even better - would it be possible to separate out DB and accession components of xref into two boxes and have a choice of valid DB for this field as either pulldown or autocomplete?

hdietze commented 9 years ago

Comment #1 originally posted by hdietze on 2013-12-16T17:51:51.000Z:

Hello,

I have tested the freeform template with an example intact id (IntAct:EBI-17086). This works perfectly fine for me, either as a DB-xref or as standalone xref.

What is the exact error message?

hdietze commented 9 years ago

Comment #2 originally posted by hdietze on 2013-12-17T09:00:19.000Z:

Hi Heiko,

I can't remember what error I got or what format I tried as it was a while ago. I will test it when I do the next annotation and let you know what's happened.

Birgit

hdietze commented 9 years ago

Comment #3 originally posted by hdietze on 2013-12-17T18:20:11.000Z:

One question: Did you try to use the IntAct ids as literature references? If yes, that would not work.