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geneontology / termgenie

Web-application for pattern-based ontology class generation
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Duplicate synonym creation #69

Closed tberardini closed 9 years ago

tberardini commented 9 years ago

Doug Howe reported by email:

It seems there are still a few more instances of duplicate synonyms. I'm not sure if these are new, or if they just didn't show in the report I had earlier this week. In Amigo2 the first example below looks like it may have a couple of synonyms duplicated or even triplicated. Almost seems like a software problem? Doug

More dups in the file.

(count(*)) 2 id GO:1904171 name downregulation of bleb assembly syn synonym

(count(*)) 2 id GO:1904171 name down-regulation of bleb assembly syn synonym

(count(*)) 2 id GO:1904172 name up regulation of bleb assembly syn synonym

(count(*)) 2 id GO:1904171 name down regulation of bleb assembly syn synonym

(count(*)) 2 id GO:1904172 name up-regulation of bleb assembly syn synonym

(count(*)) 2 id GO:1904172 name upregulation of bleb assembly syn synonym

tberardini commented 9 years ago

I'll remove the duplicates manually. Please investigate cause.

tberardini commented 9 years ago

Duplicates removed.

cmungall commented 9 years ago

Also downstream check: https://sourceforge.net/p/geneontology/ontology-requests/11658/

hdietze commented 9 years ago

The TermGenie code has now a check in the synonym generation which prevents the generation of duplicate synonyms for a single class.

hdietze commented 9 years ago

Code is deployed