geneontology / termgenie

Web-application for pattern-based ontology class generation
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NTR new child under Protein Complexes #84

Closed pfey03 closed 8 years ago

pfey03 commented 8 years ago

I’m trying to add a new protein binding term in termgenie. Either ‘glycoprotein complex’, which I do not see how to add. Or I tried ‘by activity’ and added the MF ‘cellulose binding’ for 'cellulose binding protein complex ' as the complex binds that, but since it’s not an activity GO term I can’t do that.

I think ‘glycoprotein complex’ would be the term I want to add, a simple child of GO:0043234 protein complex and parent of the specific glycoprotein terms (such as GO:0016010 dystrophin-associated glycoprotein complex). This is such a simple new term, would be strange not to use termgenie for that.

A: protein_complex_by_citation This would allow adding this simple term and the reference(s) describing the complex should be enough.

B: protein_complex_by_protein_binding Could ask for UniProt IDs of the complex partners, but this would probably go too far for Termgenie

PMIDs 7693675, 8662961 I added the following comment when trying termgenie: An example is the Dictyostelium multi protein pspB complex, which is secreted from prespore vesicles and incorporated into the spore coat.

tberardini commented 8 years ago

Are you trying to request a new TG template for specific complex terms? I've copied this request over to the main GO term tracker for your particular term.

https://github.com/geneontology/go-ontology/issues/12201