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geneontology / wc-gocam-viz

Web component to visualize GO-CAMs
BSD 3-Clause "New" or "Revised" License
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Incorrect relation direction for has_input #41

Open ValWood opened 4 months ago

ValWood commented 4 months ago

In our glycolysis model, http://noctua.geneontology.org/workbench/noctua-visual-pathway-editor/?model_id=gomodel:663d668500002302

hexose is annotated as input_of hxk1 & hxk2(the only option in Noctua)

Screenshot 2024-06-18 at 18 05 59

but in the widget, this comes out as has_input

Screenshot 2024-06-18 at 18 07 11

I don't object to the inversion of the relation, but the "arrow" appears to be the wrong way around. I would read this diagram as "D-hexose" has_input hxk2 rather than hxk2 has_input hexose

Has_output at the end of the model is fine.

ValWood commented 3 weeks ago

This issue isn't fixed in AmiGO GO-cam-viz viewer either