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genepattern
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Tangram
A method for mapping sc/snRNA-seq data to various forms of spatial data collected from the same region.
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Initial module interface feedback by Edwin
#12
edwin5588
closed
3 weeks ago
0
Include deconvolution as optional parameter group on gp module page
#11
edwin5588
closed
3 weeks ago
0
Make module runnable on GPU
#10
edwin5588
closed
3 weeks ago
0
add documentation
#9
edwin5588
closed
3 weeks ago
0
Decide what data to output (not plots)
#8
omarhalawa3301
closed
3 weeks ago
0
Add deconvolution functionality
#7
omarhalawa3301
closed
3 weeks ago
0
Add cross-validation functionality
#6
omarhalawa3301
closed
3 weeks ago
0
Create function for reading in a single line gmt's genes
#5
omarhalawa3301
closed
4 months ago
0
Test input/output ...
#4
edwin5588
closed
3 weeks ago
3
create the Tangram beta module on gp@beta, with the parameters filled out
#3
edwin5588
closed
4 months ago
0
In Main.py, create pipeline to call functions
#2
edwin5588
closed
4 months ago
0
parse arguments
#1
edwin5588
closed
4 months ago
0