Zipped file uploads + matrix transposition option

genepattern / single_cell_clustering_notebook

BSD 3-Clause "New" or "Revised" License

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Zipped file uploads + matrix transposition option #12

Closed alex-wenzel closed 5 years ago

alex-wenzel commented 5 years ago

This addresses the tickets "Enable CSVs to be gene x cell or cell x gene" and "Enable zipped CSV uploads". All files (either the single matrix or the three 10X files) can be uploaded as .zip, and the UI builder for step 1 now has an explicit option for "cell x gene" or "gene x cell" if the user is submitting a single matrix file.

edjuaro commented 5 years ago

Might be good to change the parameter gene_x_cell to be of type "choice" e.g.:

"type": "choice", "choices": { "Gene by cell": True, "Cell by gene": False, but that's more stylistic than anything.

edjuaro commented 5 years ago

A user may want to zip the barcodes, genes, and MTX files together and submit only one zip file. This should be considered a future release.

alex-wenzel commented 5 years ago

Agreed on both counts. ~~I'll make tickets for these so we remember them later on.~~ Never mind, I just noticed you made a future work section!