with variants in multiple chromosomes. The contig headers for other chromosomes are missing.
Using the VCF with bcftools results in:
[W::vcf_parse] Contig '2' is not defined in the header. (Quick workaround: index the file with tabix.)
Encountered an error, cannot proceed. Please check the error output above.
Running
writes a VCF with header
with variants in multiple chromosomes. The contig headers for other chromosomes are missing.
Using the VCF with bcftools results in: