Generate vcf.gz files from your 23andMe Genotype Data
java.lang.IllegalArgumentException: Illegal base [] seen in the allele
at htsjdk.variant.variantcontext.Allele.create(Allele.java:231)
at htsjdk.variant.variantcontext.Allele.create(Allele.java:355)
at genepi.vcf.VCFBuilder.build(VCFBuilder.java:155)
at genepi.vcf.VCFConverter.run(VCFConverter.java:58)
at genepi.base.Tool.start(Tool.java:193)
at genepi.base.Toolbox.start(Toolbox.java
Do you know where could be the problem?
Thanks
Erick Barlandas
Hey, I have a problem using the converter for Michigan. The terminal gives me this:
java -jar ./target/vcf-tools-0.1.jar vcf-generator --in Dani1.txt --ref human_g1k_v37.fasta --out Daniout --exclude Y,MT
Generate vcf.gz files from your 23andMe Genotype Data
java.lang.IllegalArgumentException: Illegal base [] seen in the allele at htsjdk.variant.variantcontext.Allele.create(Allele.java:231) at htsjdk.variant.variantcontext.Allele.create(Allele.java:355) at genepi.vcf.VCFBuilder.build(VCFBuilder.java:155) at genepi.vcf.VCFConverter.run(VCFConverter.java:58) at genepi.base.Tool.start(Tool.java:193) at genepi.base.Toolbox.start(Toolbox.java
Do you know where could be the problem? Thanks Erick Barlandas