a summary page that shows the distribution of the classified haplogroups
adds labels to phylotree to group haplogroups at different levels (e.g. one-letter, ....) (naming not yet final!)
improves searching of variants
restructures the layout and improve link sharing
Open tasks:
[x] Create self.contained report and provide it as zip file
[x] Addd annotation files and update mutation view
[x] Add possibility to search by variant position
Testing labes and annotations
Currently, the deployed trees in the phylogeny repository have no labels included. You need to checkout https://github.com/genepi/phylotree-fu-rcrs/ and switch to branch annotation-files.
Replace the phylotree-fu-rcrs@1.0 and in your local haplogrep3.yaml with the filename of your local tree.yamlfiles.
Example (/Users/lukfor/Development/git/phylotree-fu-rcrs is the directory of your phylotree-fu-rcrsrepository):
This PR adds
Open tasks:
Testing labes and annotations
Currently, the deployed trees in the phylogeny repository have no labels included. You need to checkout
https://github.com/genepi/phylotree-fu-rcrs/
and switch to branchannotation-files
.Replace the
phylotree-fu-rcrs@1.0
and in your localhaplogrep3.yaml
with the filename of your localtree.yaml
files.Example (
/Users/lukfor/Development/git/phylotree-fu-rcrs
is the directory of yourphylotree-fu-rcrs
repository):