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genepi / haplogrep3

Free mtDNA Haplogroup Classification Service
https://haplogrep.i-med.ac.at/
MIT License
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RSRS - PhyloTree 17.1 => Job failed #29

Open niki0211 opened 1 year ago

niki0211 commented 1 year ago

When choosing PhyloTree 17.1 (RSRS) as phylogenetic tree, I always get an error: "Job failed." PhyloTree 17.0 works fine.

Input format: FASTA

lukfor commented 1 year ago

Thanks for reporting this! Any chance to share the input fasta file with us?

niki0211 commented 1 year ago

Yes, I tried it with the reference sequence of homo sapiens neanderthalensis.

NC_011137.1

seppinho commented 1 year ago

Thanks for reporting. It'S related to the new cluster annotation. RSRS 17.0 will give the same classification result.

chanchaldevnani commented 4 months ago

I have been finding the same error of Job failed, or unsupported file format.

Am uploading FASTA alignment both with and without refseq

chanchaldevnani commented 4 months ago

I have been facing the same error. Job failed, file format unsupported.

I am using FASTA Alignment.

haansi commented 3 months ago

HI, which phylogenetic tree did you use? For RSRS and neanderthal sequences please use the version 17.0 not the 17.1. Do your fasta files sequences contain special characters (e.g. ":" or "-" ), does the file name end with ".fasta" or ".fa" (.txt will not work)? Try to get rid of "." in the filename unless as for the file extension seperator. No need to include a reference though - is your data from human samples?