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genepi / haplogrep3

Free mtDNA Haplogroup Classification Service
https://haplogrep.i-med.ac.at/
MIT License
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Example VCF is Not VCF Format #31

Closed DarioS closed 1 year ago

DarioS commented 1 year ago

It does not have the required columns CHROM, POS, REF, ALT, QUAL, FILTER, INFO and samples should be in columns, not rows. image

seppinho commented 1 year ago

Thats just a copy/paste error. The screenshot is for hsd above. If you are looking for vcf files, see here: https://github.com/genepi/haplogrep3/tree/main/test-data/vcf Updated docs: https://haplogrep.readthedocs.io/en/latest/input-formats/