Hi, recently I downloaded v3.2.1 for linux a and followed the simple instruction given in docs/installation.md.
However when executing haplogrep3 (without argument at least) it complains it cannot find tree.yaml.
$ ./haplogrep3
Haplogrep 3 3.2.1
(c) 2022-2023 Sebastian Schönherr, Hansi Weissensteiner, Lukas Forer
Loading configuration from file 'haplogrep3.yaml' failed.
/..../haplogrep3-3.2.1/trees/phylotree-fu-rcrs/1.2/tree.yaml (No such file or directory) `
It turns out that there is another zip file ./trees/phylotree-fu-rcrs/1.2/package.zip that when unzipped at its parent directory produces the missing yaml together with other files that overwrite some files that are already "unzip".
I guess the best course of action would be remove the second unzip step and include every needed file directly in the main zip file.
Hi, recently I downloaded v3.2.1 for linux a and followed the simple instruction given in docs/installation.md.
However when executing haplogrep3 (without argument at least) it complains it cannot find
tree.yaml
.It turns out that there is another zip file
./trees/phylotree-fu-rcrs/1.2/package.zip
that when unzipped at its parent directory produces the missing yaml together with other files that overwrite some files that are already "unzip".I guess the best course of action would be remove the second unzip step and include every needed file directly in the main zip file.