Closed oskarvid closed 6 years ago
I fixed the issue I opened: https://github.com/genepi/imputationserver-docker/issues/2 The issue is that geneplotter isn't available for the currently installed R version when trying to install with the default repository. To solve it I used the biocLite repository, rebuilt the image and tested it using the https://imputationserver.sph.umich.edu/static/downloads/hapmap300.chr1.recode.vcf.gz test dataset from the docker.md file. Now the qcreport.html file does not complain about a missing geneplotter library anymore. I hope this helps.
qcreport.html
great! good job! thank you!
lukfor
commented
6 years ago lukfor
commented
6 years ago
I fixed the issue I opened: https://github.com/genepi/imputationserver-docker/issues/2 The issue is that geneplotter isn't available for the currently installed R version when trying to install with the default repository. To solve it I used the biocLite repository, rebuilt the image and tested it using the https://imputationserver.sph.umich.edu/static/downloads/hapmap300.chr1.recode.vcf.gz test dataset from the docker.md file. Now the
qcreport.htmlfile does not complain about a missing geneplotter library anymore. I hope this helps.