Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity
To make it easy to compare variants before and after imputation, it would be great if the server didn't destroy the identifiers in the ID column. For instance, the input file might look like:
#CHROM POS ID REF ALT
10 133243 GSA-rs76243118 G A
but in the imputation server's output file:
#CHROM POS ID REF ALT
chr10 87303 chr10:87303:G:A G A
It is not easy to match these without resorting to the coordinates and reversing the lift-over that was done from hg19 to hg38.
To make it easy to compare variants before and after imputation, it would be great if the server didn't destroy the identifiers in the
IDcolumn. For instance, the input file might look like:but in the imputation server's output file:
It is not easy to match these without resorting to the coordinates and reversing the lift-over that was done from hg19 to hg38.