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genepi / imputationserver

Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity
https://imputationserver.sph.umich.edu/
GNU Affero General Public License v3.0
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Add refpanel option to limit allowed allele switches #132

Closed seppinho closed 7 months ago

seppinho commented 7 months ago

This pull request allows to specify the allowed allele switches for each reference panel. By default, no allele switches limit is defined. The MAX number of allowed allele switches can be specified as follows in the reference panel YAML file.

    qcFilter:
      alleleSwitches: 100
codecov[bot] commented 7 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (4227800) 51.70% compared to head (74ba9cc) 52.15%.

:exclamation: Current head 74ba9cc differs from pull request most recent head 9469513. Consider uploading reports for the commit 9469513 to get more accurate results

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #132 +/- ## ============================================ + Coverage 51.70% 52.15% +0.44% - Complexity 681 691 +10 ============================================ Files 59 59 Lines 4526 4533 +7 Branches 568 569 +1 ============================================ + Hits 2340 2364 +24 + Misses 2008 1996 -12 + Partials 178 173 -5 ```

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