genepi / imputationserver

Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity
https://imputationserver.sph.umich.edu/
GNU Affero General Public License v3.0
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Post-imputation frequency plot #140

Open rskl92 opened 4 months ago

rskl92 commented 4 months ago

Dear developers,

I have this plot. Based on the R2, I don't think I should feel worried but the plot looks very odd. There seems to be some strand ambiguities. Is there something that has gone wrong and how do I change it? It looks like A,C,G,T snps. It also look like the diagonal line is opposite to what it should be.

I would really appreciate your advice.

Many thanks

image