Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity
In the online submission site (https://imputation.biodatacatalyst.nhlbi.nih.gov/), one can impute data against TOPMED2 DB.
However, when aiming to impute with a API Token from the console the options to use as a imputation reference are only:
hrc-r1.1
1000g-phase-3-v5
gasp-v2
genome-asia-panel
1000g-phase-1
cappa
hapmap-2
In the online submission site (https://imputation.biodatacatalyst.nhlbi.nih.gov/), one can impute data against TOPMED2 DB. However, when aiming to impute with a API Token from the console the options to use as a imputation reference are only: hrc-r1.1 1000g-phase-3-v5 gasp-v2 genome-asia-panel 1000g-phase-1 cappa hapmap-2
here:
https://imputationserver.readthedocs.io/en/latest/api/
Is there a way to use TopMed to impute data using a API Token? One can only use TopMed only from the website and not from the command line?
Thanks