genepi / imputationserver

Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity
https://imputationserver.sph.umich.edu/
GNU Affero General Public License v3.0
77 stars 41 forks source link

Add ancestry estimation to pgs-calculation #98

Closed lukfor closed 1 year ago

lukfor commented 1 year ago
codecov[bot] commented 1 year ago

Codecov Report

Merging #98 (9944ab4) into master (2889f5e) will decrease coverage by 7.40%. The diff coverage is 8.84%.

@@             Coverage Diff              @@
##             master      #98      +/-   ##
============================================
- Coverage     58.86%   51.47%   -7.40%     
- Complexity      675      678       +3     
============================================
  Files            53       59       +6     
  Lines          3924     4538     +614     
  Branches        518      570      +52     
============================================
+ Hits           2310     2336      +26     
- Misses         1441     2024     +583     
- Partials        173      178       +5     
Impacted Files Coverage Δ
...tionserver/steps/ancestry/PopulationPredictor.java 0.00% <0.00%> (ø)
...pi/imputationserver/steps/ancestry/TraceBatch.java 0.00% <0.00%> (ø)
...ionserver/steps/ancestry/TraceInputValidation.java 0.00% <0.00%> (ø)
...i/imputationserver/steps/ancestry/TraceMapper.java 0.00% <0.00%> (ø)
...imputationserver/steps/ancestry/TracePipeline.java 0.00% <0.00%> (ø)
...epi/imputationserver/steps/ancestry/TraceStep.java 0.00% <0.00%> (ø)
...ionserver/steps/imputation/ImputationPipeline.java 0.00% <ø> (ø)
...in/java/genepi/imputationserver/util/PgsPanel.java 70.96% <0.00%> (-4.90%) :arrow_down:
...pi/imputationserver/steps/fastqc/LiftOverTask.java 84.84% <33.33%> (-2.66%) :arrow_down:
.../imputationserver/steps/CompressionEncryption.java 73.46% <71.79%> (-1.89%) :arrow_down:
... and 1 more

:mega: We’re building smart automated test selection to slash your CI/CD build times. Learn more