search

genepi / imputationserver2

MIT License
10 stars 3 forks source link

Unable to find snps-excluded.txt file #27

Closed tlawler2 closed 1 month ago

tlawler2 commented 2 months ago

Hello,

I am attempting to use the server now that it has finished updates. In my recent attempt, my job failed during the quality control process (expected due to strand flips, allele switches), but I was unable to locate the snps-excluded.txt file. I need this file in order to correct the aberrant SNPs. Is anyone else having this problem? I think that the file was not created. Thank you to anyone who can help.

seppinho commented 1 month ago

Thanks for reporting. This is a bug on our side and we are already working on a fix.

seppinho commented 1 month ago

We have just deployed a new version. You should now see the QC statistics. Thanks for reporting this issue!

tlawler2 commented 1 month ago

It works! Thanks for your attention to this issue.

-Tom

From: Sebastian Schönherr @.> Sent: Friday, September 27, 2024 2:16 PM To: genepi/imputationserver2 @.> Cc: THOMAS PATRICK LAWLER @.>; Author @.> Subject: Re: [genepi/imputationserver2] Unable to find snps-excluded.txt file (Issue #27)

We have just deployed a new version. You should now see the QC statistics. Thanks for reporting this issue!

— Reply to this email directly, view it on GitHubhttps://urldefense.com/v3/__https://github.com/genepi/imputationserver2/issues/27*issuecomment-2379908232__;Iw!!Mak6IKo!KtKn2LXlIwjKAb_MJumw8CM_dRvi5XJMoaY2HR4E-lB1l7iVqCkDu3sk7D_RCuNzJRR6fRH6HgkVFm5K8XGSwDNoPA$, or unsubscribehttps://urldefense.com/v3/__https://github.com/notifications/unsubscribe-auth/AZ4X4WZQ522RIX4CPE2F6MTZYWVJ3AVCNFSM6AAAAABO46NPTGVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDGNZZHEYDQMRTGI__;!!Mak6IKo!KtKn2LXlIwjKAb_MJumw8CM_dRvi5XJMoaY2HR4E-lB1l7iVqCkDu3sk7D_RCuNzJRR6fRH6HgkVFm5K8XENUWinmQ$. You are receiving this because you authored the thread.Message ID: @.***>

seppinho commented 1 month ago

Great! If you have scripts for fixing the issues (or using the W. Rayner tool), please let us know so we can share it with the community on our help page.