genepi / imputationserver2

MIT License
0 stars 2 forks source link

Incomplete Handling of Normalized Multiallelic SNPs in v2.0.0 #28

Closed seppinho closed 2 weeks ago

seppinho commented 2 weeks ago

In the current version (v2.0.0), when a normalized multiallelic SNP for a pos is encountered, the QC only checks the first alternate allele against the reference panel. This approach may result in missed matches for other alternate alleles.