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genepi
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umi-pipeline-nf
Nextflow pipeline to analyze ONT UMI Sequencing data
Mozilla Public License 2.0
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adapted version of mutserve
#22
AmstlerStephan
opened
1 year ago
0
Allow to run pipeline for single barcode
#21
AmstlerStephan
closed
10 months ago
0
Variant calling
#20
AmstlerStephan
closed
1 year ago
0
Add feature to perform haplotyping
#19
AmstlerStephan
opened
1 year ago
0
Subsampling
#18
AmstlerStephan
closed
1 year ago
0
Refactor map 1d
#17
AmstlerStephan
closed
1 year ago
0
Dev
#16
AmstlerStephan
closed
1 year ago
0
Medaka newest version
#15
AmstlerStephan
closed
1 year ago
0
first draft of the pipeline
#14
AmstlerStephan
closed
1 year ago
0
Polish cluster
#13
AmstlerStephan
closed
1 year ago
0
adapted parse_clusters.py to use vsearch clusters dir and fasta
#12
AmstlerStephan
closed
1 year ago
0
Reformat filter cluster
#11
AmstlerStephan
closed
1 year ago
0
Add sample name
#10
AmstlerStephan
closed
1 year ago
0
optimize for nanopore runs by allowing the fastq_pass folder as input
#9
AmstlerStephan
closed
1 year ago
1
Cluster
#8
AmstlerStephan
closed
1 year ago
0
Multi line bed file
#7
AmstlerStephan
opened
1 year ago
0
Detect umi fasta
#6
AmstlerStephan
closed
1 year ago
0
Detect umi fasta
#5
AmstlerStephan
closed
1 year ago
0
Split reads
#4
AmstlerStephan
closed
1 year ago
0
First process
#3
AmstlerStephan
closed
1 year ago
0
Map 1d
#2
AmstlerStephan
closed
1 year ago
0
Configuration
#1
AmstlerStephan
closed
1 year ago
0
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