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genescf / GeneSCF

Gene Set Clustering based on Functional annotation
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NCG database not working #14

Closed lubertorubior closed 8 months ago

lubertorubior commented 2 years ago

Hello and thank you for creating GeneSCF. We are using it with great results, but when we try the NCG database it doesn't work on the latest version. I have reviewed the code and I see it has been disabled, but this is not stated in the documentation. Is it possible to make it work?

Best, Luis.

genescf commented 2 years ago

Hello and thank you for creating GeneSCF. We are using it with great results, but when we try the NCG database it doesn't work on the latest version. I have reviewed the code and I see it has been disabled, but this is not stated in the documentation. Is it possible to make it work?

Best, Luis.

Hi Luis,

I will check if I can make it work with the latest version of NCG and get back to you.

lubertorubior commented 2 years ago

Cool! Thank you very much for your work.

decodebiology commented 8 months ago

There are some formatting issues with different versions of NCG. We could not implement NCG efficiently because of inconsistency in the database structure.