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genescf / GeneSCF

Gene Set Clustering based on Functional annotation
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Error: Illegal division by zero at //List.pl line 599, <IN2> chunk 1 #7

Closed Tony76 closed 4 years ago

Tony76 commented 9 years ago

Hi,

I've just tried to run geneSCF on my own data and got the following error message: Illegal division by zero at //class/lib/List/Vectorize/lib/List.pl line 599, chunk 1 Any suggestion? Thank you in advance,

Tony

decodebiology commented 9 years ago

Please let me know in which operating system are you using.

/santhilal

decodebiology commented 9 years ago

JFI: This usually means gene identifier in your input list (genes) and in the input database file (for functional annotation) does not match. But there might be other issues which i never faced before. if possible send your sample input gene list and sample database file. If you are using your own annotation as input please make sure you followed these steps (link below):

https://www.biostars.org/p/150137/#150175

Tony76 commented 9 years ago

Hi,

Thank you for your reply. I had a look into the biostars link and indeed, it was an annotation issue. The problem is now fixed.

Best regards,

Tony

decodebiology commented 9 years ago

All the best. The issue will be closed now.

Shahina commented 8 years ago

Hi,

I have already used -m=update option in command and xla folder is generated under db folder too. I also tested the example which is provided in the documentation and it is giving me same error.

Regards, S

decodebiology commented 8 years ago

can you please enter the command used to run test dataset ?