search

genescf / GeneSCF

Gene Set Clustering based on Functional annotation
21 stars 5 forks source link

Illegal division by zero at /geneSCF-master-source-v1.1-p2/class/lib/List/Vectorize/lib/List.pl line 599, <IN2> chunk 1. #9

Closed jkreinz closed 3 years ago

jkreinz commented 3 years ago

Hi there,

I'm trying to run geneSCF but get an error after downloading the relevant database and trying to run the go enrichment.

I first use the command: ./prepare_database -db=GO_BP -org=tair and then run go enrichment with: ./geneSCF -m=normal -i=../1.ATtest -db=GO_BP -org=tair -o=1.go -t=gid --plot=no --background=27462

but get the following error: 

GO_BP last updated 2021-01-15 15:58
Illegal division by zero at /ohta/julia.kreiner/waterhemp/data/fixed_assembly/reveal_psuedoassembly/toshare/permuted_outliers/geneSCF-master-source-v1.1-p2/class/lib/List/Vectorize/lib/List.pl line 599, <IN2> chunk 1.
Fri Jan 15 16:05:14 EST 2021 finished processing

Thanks for your help.

jkreinz commented 3 years ago

Here are two different input files that I have tried.

1_ATtest.txt 1_AT.txt

decodebiology commented 3 years ago

Please have a look at this, https://github.com/genescf/GeneSCF/issues/7#issuecomment-135810510 In addition to that, try specifying complete input path for '-i='.

Get back to me if it still doesn't work.