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genesofeve / projectR

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Possible bug with projectionDriver() when normalize_pattern = T. #28

Open jaredslosberg opened 1 year ago

jaredslosberg commented 1 year ago

Check that group means and variances are appropriately adjusted by pattern normalization. Different numbers of genes are returned as significant when normalize_pattern is False.

jaredslosberg commented 1 year ago

Further, function should be rewritten so that the test returns the pvalue. As is, the threshold is user provided and used to construct the confidence interval for difference in group means, and just returns whether or not a gene is significant at that threshold.

jaredslosberg commented 7 months ago

@rpalaganas