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genetics-of-dna-methylation-consortium / godmc_phase2

This repository contains the code to run the analysis pipeline for phase 2 of goDMC released June 2024.
GNU General Public License v3.0
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[Bug]: no non-genetic PCs remained #39

Closed ZXiaopu closed 1 month ago

ZXiaopu commented 1 month ago

Contact Details

No response

Scripts

03e-methylation_adjustment2.sh

What happened?

Some cohorts reported all methylation PCs are genetic PCs so 03d script failed.

How can the bug be reproduced?

No response

R version

4.4.0 (April, 2024)

Python version

None

Relevant log output

No response

ZXiaopu commented 1 month ago

Pull request submitted https://github.com/genetics-of-dna-methylation-consortium/godmc_phase2/pull/40#issue-2562121835