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genetics-statistics / GEMMA

Genome-wide Efficient Mixed Model Association
https://github.com/genetics-statistics/GEMMA
GNU General Public License v3.0
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gxe error #119

Closed ghost closed 6 years ago

ghost commented 6 years ago

Hi,

i try to perform gxe analysis but i always get error:

Reading Files ... Segmentation fault (core dumped)

i know there was similar error here previously so i update my OpenBLAS to newest version, but it still doesn't work. I try both GEMMA version 0.96 and 0.97. Moreover, every analysis without -gxe works fine.

My code is: gemma.linux -bfile chr1 -k kinship.txt -lmm 1 -n 1 2 -c cv.txt -gxe env.txt -p pheno.txt

I will be grateful for any suggestion, how can i fix this issue.

All the best, Marcin

pcarbo commented 6 years ago

@grzybowskim Thank you for your post, and your interest in GEMMA. Can you please post this same question on the Google Group? Thank you.