genetics-statistics / GEMMA

Genome-wide Efficient Mixed Model Association
https://github.com/genetics-statistics/GEMMA
GNU General Public License v3.0
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Relatedness matrix inputs #202

Closed asafpr closed 4 years ago

asafpr commented 5 years ago

Hi, I'm confused about the input for relatedness. with ./gemma -h 4 it states -ksnps as input file but with -h 1 it requires -g and -p. Why should phenotypes be an input? Isn't it only computed on genotypes? Thanks Using 0.98.1