How to find Significant SNPs from the results of GEMMA

genetics-statistics / GEMMA

Genome-wide Efficient Mixed Model Association

https://github.com/genetics-statistics/GEMMA

GNU General Public License v3.0

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How to find Significant SNPs from the results of GEMMA #251

Open sekhwal opened 3 years ago

sekhwal commented 3 years ago

Hi, I have got the results of BSLMM at GEMMA. I have files such as prefix (bv.txt, gamma.txt, hyp.txt, log.txt, param.txt). However, I am not very familiar with these results. Please let me know how to find significant SNPs from these results. I am looking to calculate multiple correction using bonferroni at p-value but I can not see the p-values in the GEMMA results files.

Thank you,