Phenotype file format for eQTL analysis

genetics-statistics / GEMMA

Genome-wide Efficient Mixed Model Association

https://github.com/genetics-statistics/GEMMA

GNU General Public License v3.0

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Phenotype file format for eQTL analysis #257

Open SNgalaxy opened 3 years ago

SNgalaxy commented 3 years ago

Hi there,

I am running eQTL analysis and I have multiple samples from different biopsy locations in my expression data that I can not remove for my analysis. How does GEMMA handle the phenotypic format in this situation, considering that number of rows in the phenotype data should be the same as genotype data?

Thanks