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genetics-statistics / GEMMA

Genome-wide Efficient Mixed Model Association
https://github.com/genetics-statistics/GEMMA
GNU General Public License v3.0
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basic usage doesn't work #264

Closed sql647 closed 2 years ago

sql647 commented 2 years ago

hello, i wanna compare basic and LMM association analyses. At first I run gemma -g geno -p pheno -d eigen.eigenD.txt -u eigen.eigenU.txt -lmm 2 -o lmm to get LMM association output. then i run gemma -g geno -p pheno -lmm 2 -o basic,but I got an error error! missing relatedness file. I'm confused because basic analysis does not require a relatedness matrix.