Hi, I used the latest gemma-wrapper and gemma with the following command and encounted an error. Can you help out where is the issue happen?
gemma-wrapper --json \
--loco -- \
--bfile prune \
-p phe_tail.txt \
-gk \
-debug > K.json
gemma-wrapper 0.99.6 (Ruby 2.0.0) by Pjotr Prins 2017-2022
NOTE: gemma-wrapper is soon to be replaced
Using GEMMA 0.98.6 (2022-08-05) by Xiang Zhou, Pjotr Prins and team (C) 2012-2022
Found 0.98.6, comparing against expected v0.98.4
GEMMA 0.98.6 (2022-08-05) by Xiang Zhou, Pjotr Prins and team (C) 2012-2022
Academic tradition requires you to cite works you base your article on.
When using programs that use GNU Parallel to process data for publication
please cite:
@article{Tange2011a,
title = {GNU Parallel - The Command-Line Power Tool},
author = {O. Tange},
address = {Frederiksberg, Denmark},
journal = {;login: The USENIX Magazine},
month = {Feb},
number = {1},
volume = {36},
url = {http://www.gnu.org/s/parallel},
year = {2011},
pages = {42-47},
doi = {http://dx.doi.org/10.5281/zenodo.16303}
}
(Feel free to use \nocite{Tange2011a})
This helps funding further development; AND IT WON'T COST YOU A CENT.
If you pay 10000 EUR you should feel free to use GNU Parallel without citing.
If you send a copy of your published article to tange@gnu.org, it will be
mentioned in the release notes of next version of GNU Parallel.
/gpfs/home/zhangbl/software/GWAS_software/gemma-wrapper-master/bin/gemma-wrapper:279:in `': Expected GEMMA -a genotype file switch (RuntimeError)
Hi, I used the latest gemma-wrapper and gemma with the following command and encounted an error. Can you help out where is the issue happen? gemma-wrapper --json \ --loco -- \ --bfile prune \ -p phe_tail.txt \ -gk \ -debug > K.json
gemma-wrapper 0.99.6 (Ruby 2.0.0) by Pjotr Prins 2017-2022
NOTE: gemma-wrapper is soon to be replaced Using GEMMA 0.98.6 (2022-08-05) by Xiang Zhou, Pjotr Prins and team (C) 2012-2022
Found 0.98.6, comparing against expected v0.98.4 GEMMA 0.98.6 (2022-08-05) by Xiang Zhou, Pjotr Prins and team (C) 2012-2022 Academic tradition requires you to cite works you base your article on. When using programs that use GNU Parallel to process data for publication please cite:
@article{Tange2011a, title = {GNU Parallel - The Command-Line Power Tool}, author = {O. Tange}, address = {Frederiksberg, Denmark}, journal = {;login: The USENIX Magazine}, month = {Feb}, number = {1}, volume = {36}, url = {http://www.gnu.org/s/parallel}, year = {2011}, pages = {42-47}, doi = {http://dx.doi.org/10.5281/zenodo.16303} }
(Feel free to use \nocite{Tange2011a})
This helps funding further development; AND IT WON'T COST YOU A CENT. If you pay 10000 EUR you should feel free to use GNU Parallel without citing.
If you send a copy of your published article to tange@gnu.org, it will be mentioned in the release notes of next version of GNU Parallel.
/gpfs/home/zhangbl/software/GWAS_software/gemma-wrapper-master/bin/gemma-wrapper:279:in `': Expected GEMMA -a genotype file switch (RuntimeError)