Downsampling(LD Pruning)

genetics-statistics / faster_lmm_d

A faster lmm for GWAS. Supports GPU backend.

GNU General Public License v3.0

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Closed prasunanand closed 6 years ago

prasunanand commented 6 years ago

I am adding a downsampling feature.

Bimbam File => Downsampled Bimbam File which is around 30% of original file.

This reduces IO bottleneck in Readfile_geno() and Analyze_bimbam() in all the models.

pjotrp commented 6 years ago

That is great. Can you document and share the method so we can validate?

prasunanand commented 6 years ago

Yeah sure.