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genid / Yleaf

Yleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data
GNU General Public License v3.0
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Add Yleaf to PyPI/bioconda #24

Open TCLamnidis opened 8 months ago

TCLamnidis commented 8 months ago

Are there plans to add Yleaf to PyPI and/or bioconda? (I did not find it on either. Sorry if it is already there.)

The existing conda environment file is already great for standalone running, but including Yleaf into PyPI (and from there bioconda) would get you a docker/singularity container for each release without any extra effort, via biocontainers. That in turn would make it possible to include Yleaf in reproducible workflows and pipelines.

dionzand commented 8 months ago

Thanks for your suggestion! I will look into containarization. But please also feel free to create a pull request if you have created a docker file yourself. We would be happy to host community provided docker images.