How to choose the position files?

genid / Yleaf

Yleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data

GNU General Public License v3.0

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How to choose the position files? #6

Closed baif666 closed 2 years ago

baif666 commented 2 years ago

Hi genid, I found there are three versions of 'Position File' (MCS_Ampliseq/Visage_Ampliseq/WGS). What are the differences between them? How to choose one? I use the GRCh37 (100 genomes) as the reference and I don't know which one I can use. Thanks!

bramvanwersch commented 2 years ago

Hey @baif666, the position file you want to use is the Position_files/WGS_hg19.txt.

Soon (hopefully today) a new version of the software will release. Here the position files will be cleaned up a bit as well as an improved version of the haplogroup tree will be added.

baif666 commented 2 years ago

Thanks!