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genome-in-a-bottle / giab_data_indexes

This repository contains data indexes from NIST's Genome in a Bottle project.
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Incorrect link to PacBio CLR data for HG004 #11

Closed AndrewCarroll closed 3 years ago

AndrewCarroll commented 3 years ago

This is a minor issue. It looks like the link listed in the main table for the PacBio CLR data of HG004 points to the wrong location.

The link points to: https://github.com/genome-in-a-bottle/giab_data_indexes/blob/master/AshkenazimTrio/sequence.index.AJtrio_PacBio_MtSinai_NIST_subreads_fasta_10082018.HG004

and this file is not present. There is a link in the manifest that appears to be correct for HG004 at the following location:

https://github.com/genome-in-a-bottle/giab_data_indexes/blob/master/AshkenazimTrio/sequence.index.AJtrio_PacBio_MtSinai_NIST_subreads_fasta_10052018.HG004

It may be that this link just needs to be updated.

chunlinxiao commented 3 years ago

thanks Andrew - I'll take a look at this.

chunlinxiao commented 3 years ago

now the file https://github.com/genome-in-a-bottle/giab_data_indexes/blob/master/AshkenazimTrio/sequence.index.AJtrio_PacBio_MtSinai_NIST_subreads_fasta_10082018.HG004 is there. Thanks

AndrewCarroll commented 3 years ago

Thank you!