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genome-in-a-bottle / giab_data_indexes

This repository contains data indexes from NIST's Genome in a Bottle project.
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PacBio data download failed #20

Open crazysummerW opened 1 year ago

crazysummerW commented 1 year ago

Hello, I want to download the PacBio bam. for example: wget ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/AshkenazimTrio/HG002_NA24385_son/PacBio_MtSinai_NIST/CSHL_bwamem_bam_GRCh37/BWA-MEM_Chr10_HG002_merged_11_12.sort.bam but I failed. image Could you tell me the correct download link?

chunlinxiao commented 1 year ago

the PacBio bwamem and blasr bams have been removed a while age, and replaced with NGLMR and minimap2. Please follow the links from the index table, eg.

https://ftp.ncbi.nlm.nih.gov/ReferenceSamples/giab/data_indexes/AshkenazimTrio/alignment.index.AJtrio_PacBio_Baylor_NGMLR_bam_GRCh37_07092018.HG002

Thanks