Hello!
I tried to check HsMetrics for NA12878 TruSeq bam and could not find any info about fasta reference used in alignment.
I searched through GIAB website, but it seems the info was updated or deleted. FAQ as well as ftp readme mention newer versions of hg37/19 that are not suitable for making an interval_list (in my case).
The bam file is NIST-hg001-7001-ready.bam and targets are TruSeq_exome_targeted_regions.hg19.bed, seems they have different chr namings?
Hello! I tried to check HsMetrics for NA12878 TruSeq bam and could not find any info about fasta reference used in alignment. I searched through GIAB website, but it seems the info was updated or deleted. FAQ as well as ftp readme mention newer versions of hg37/19 that are not suitable for making an interval_list (in my case). The bam file is
NIST-hg001-7001-ready.bamand targets areTruSeq_exome_targeted_regions.hg19.bed, seems they have different chr namings?