Missing Bed files for Illumina Whole Exome by Oslo Uni. Hospital

[shexuan]

Do you have avaliable capture bed files of HG002、HG003、HG004 HG005?

[shexuan]

And the md5sum for ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/AshkenazimTrio/HG002_NA24385_son/OsloUniversityHospital_Exome/151002_7001448_0359_AC7F6GANXX_Sample_HG002-EEogPU_v02-KIT-Av5_AGATGTAC_L008.posiSrt.markDup.bai is wrong. Please check it.

[jzook]

The capture file is under ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/AshkenazimTrio/analysis/OsloUniversityHospital_Exome_GATK_jointVC_11242015/

The md5sum for the bai file should be d4fea426c3e2e9a71bb92e6526b4df6f. Is this what you have?

[shexuan]

@jzook Yes, that's what I get. But Here is wrong, it's the same as the corresponding bam file. And thanks for the bed files.

[jzook]

Thanks, @shexuan! @chunlinxiao, could you take a look at the link to which shexuan refers? Thanks!

[chunlinxiao]

Just noticed that this email sit in Junk folder – I will take a look the file.

Thanks

chunlin

From: jzook notifications@github.com Sent: Monday, August 13, 2018 9:29 AM To: genome-in-a-bottle/giab_data_indexes giab_data_indexes@noreply.github.com Cc: Xiao, Chunlin (NIH/NLM/NCBI) [E] xiao2@ncbi.nlm.nih.gov; Mention mention@noreply.github.com Subject: Re: [genome-in-a-bottle/giab_data_indexes] Missing Bed files for Illumina Whole Exome by Oslo Uni. Hospital (#4)

Thanks, @shexuanhttps://github.com/shexuan! @chunlinxiaohttps://github.com/chunlinxiao, could you take a look at the link to which shexuan refers? Thanks!

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://github.com/genome-in-a-bottle/giab_data_indexes/issues/4#issuecomment-412517950, or mute the threadhttps://github.com/notifications/unsubscribe-auth/AM6o1opZ6GeE5KZEbofITTLVylXrSue1ks5uQX8lgaJpZM4V3c3z.

[chunlinxiao]

the md5 for the bai is fixed. thanks shexun.

chunlin

[chunlinxiao]

I'm closing this one.