Truth_set information for benchmarking

genome-in-a-bottle / giab_latest_release

This repository contains information about latest release from Genome in a Bottle project

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Truth_set information for benchmarking #18

Open poddarharsh15 opened 1 year ago

poddarharsh15 commented 1 year ago

Hi, I'm currently working on benchmarking VCF files generated from HG002_data(test_run just one sample) for SV calling(Manta, lumpy, GRIDSS, nf-core/sarek) against a truth set. I aligned the BAM files using GRCh38. Any ideas on how to effectively benchmark my results on which truth set? Thank you.