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genome-nexus / annotation-tools

Tools developed for AACR GENIE to allow annotation of vcf and maf files from a number of centers and merging the results
MIT License
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vcf2maf python tool #50

Closed rmadupuri closed 1 year ago

rmadupuri commented 1 year ago

Added the standalone python version of vcf2maf tool.

The code was extracted and edited from the GENIE Annotation Suite.

ruslan-forostianov commented 1 year ago

@rmadupuri It's a nice initiative to extract generic vcf to maf functionality of standardize_mutation_data.py to vcf2maf.py. Can you please summarise what functionality of standardize_mutation_data.py has been left out in vcf2maf.py? e.g. MAF standardization (MAF -> standardized MAF)

rmadupuri commented 1 year ago

Updated in #51